PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g21750.1
Common NameLR48_Vigan02g059500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 179aa    MW: 20281.8 Da    PI: 5.0279
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g21750.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB164.21.8e-515100297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     reqd+++Pianv rim+k+lP++akis++aket+qecvse+isf+t+ea+d+cqre+rkt++++d+lwa+++lGf+dy+++l++yl++yr+ eg+
  Vang06g21750.1   5 REQDQYMPIANVLRIMRKILPSHAKISDEAKETIQECVSEYISFITAEANDRCQREQRKTVTAEDVLWAMGKLGFDDYAQSLSIYLNRYRQSEGD 99 
                     89*******************************************************************************************99 PP

           NF-YB  97 k 97 
                     +
  Vang06g21750.1 100 R 100
                     7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.5E-474109IPR009072Histone-fold
SuperFamilySSF471135.9E-367108IPR009072Histone-fold
PfamPF008083.7E-251074IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.5E-153856No hitNo description
PRINTSPR006152.5E-155775No hitNo description
PRINTSPR006152.5E-157694No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MAGAREQDQY MPIANVLRIM RKILPSHAKI SDEAKETIQE CVSEYISFIT AEANDRCQRE  60
QRKTVTAEDV LWAMGKLGFD DYAQSLSIYL NRYRQSEGDR MSVRRAPTSV PPMEMMNPPY  120
QPYPPHGFGM FDYDPSHSIA SSSRSAGFVP NIDPYVNPKP NDDFDPFLNP KPADDNHM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B2e-39595292Transcription factor HapC (Eurofung)
4g91_B2e-39595292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511494.11e-115PREDICTED: nuclear transcription factor Y subunit B-9-like
SwissprotQ9SFD81e-56NFYB9_ARATH; Nuclear transcription factor Y subunit B-9
TrEMBLA0A0L9TV811e-132A0A0L9TV81_PHAAN; Uncharacterized protein
TrEMBLA0A0S3STK21e-132A0A0S3STK2_PHAAN; Uncharacterized protein
STRINGGLYMA20G00240.12e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27283279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.12e-57NF-YB family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]